FastQCFastQC Report
Sat 3 Sep 2022
EGAF00003442656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1447688
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCGTC16388811.320671304866794No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCGT240501.6612695553185495RNA PCR Primer, Index 26 (95% over 21bp)
CTCTTATACACATCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCG119050.8223456987969783No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCC15990.11045197584009814No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)