FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003442664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1937810
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGTC1689628.719224278954076RNA PCR Primer, Index 23 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGT278401.4366733580691606No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCG136570.7047646570097171No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)