FastQCFastQC Report
Sat 3 Sep 2022
EGAF00003442666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1018478
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTC14265714.006880855551126No Hit
TCTTATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGT258852.541537470617922No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCG117911.1577078739059654No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCC11510.11301176854090123No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)