FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003442670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499381
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTC16131232.30239035926477No Hit
TCTTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGT267205.350624072601881No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCG127692.5569655233178676No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCC21730.43513870171272034No Hit
CAGCTTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCC8430.1688089855240788No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)