FastQCFastQC Report
Sat 10 Sep 2022
EGAF00003442690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3873243
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGTC608111.5700280101196853RNA PCR Primer, Index 27 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGT111670.2883113711171749No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCG44620.1152006212881557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)