FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003442708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3541184
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCACTGTATCTCGTATGCCGTC1015162.8667248016482625No Hit
TCTTATACACATCTCCGAGCCCACGAGACACCACTGTATCTCGTATGCCGT145910.4120373298874049No Hit
CTCTTATACACATCTCCGAGCCCACGAGACACCACTGTATCTCGTATGCCG59250.167316919990602No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)