FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003442736

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442736
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences190954
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCGTC187969.843208311949475No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCGT17160.8986457471432909RNA PCR Primer, Index 26 (95% over 21bp)
CTCTTATACACATCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCG8850.46346240455816584No Hit
GTTATACACATCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCGTC4380.22937461378132953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)