FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003442801

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442801
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2989292
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN99500.33285473617164196No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNN34940.11688386413906704No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNN31770.10627934641379966No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)