FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003442813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1942980
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN67140.3455516783497514No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNN22240.11446335011168411No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNN21010.10813286806863683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)