FastQCFastQC Report
Sat 3 Sep 2022
EGAF00003442840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1072892
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTC18292617.04980557222908No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGT314692.9331004425422127No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCG124501.160415027794037No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCC24020.22388087524186964No Hit
TTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTC14430.1344962959925137No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)