FastQCFastQC Report
Sat 3 Sep 2022
EGAF00003442842

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442842
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1069324
Sequences flagged as poor quality0
Sequence length51
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGGCAGAAATCTCGTATGCCGTC16470115.402347651413418No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGGCAGAAATCTCGTATGCCGT308912.8888344411983646No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGGCAGAAATCTCGTATGCCG107661.0068042987906378No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACAGGCAGAAATCTCGTATGCC19050.17814993397697984No Hit
TTTATACACATCTCCGAGCCCACGAGACAGGCAGAAATCTCGTATGCCGTC12660.11839255454848109No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTAC11710.10950843710605954No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)