FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003442852

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442852
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences779834
Sequences flagged as poor quality0
Sequence length51
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGTC407795.229189801932206RNA PCR Primer, Index 23 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGT82251.0547116437600823No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCG40500.5193412957116514No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)