FastQCFastQC Report
Wed 8 May 2024
EGAF00003442856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1010330
Total Bases51.5 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCCGT553065.474053032177605No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCCG125191.239100096008235No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCC58690.5808993101263944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)