FastQCFastQC Report
Sat 3 Sep 2022
EGAF00003442918

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442918
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1039263
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGGTTGGGATCTCGTATGCCGTC237662.2868128664255343No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGGTTGGGATCTCGTATGCCGT21020.20225871603241913No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGGTTGGGATCTCGTATGCCG10750.10343868683865393No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)