FastQCFastQC Report
Wed 8 May 2024
EGAF00003443132

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003443132
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences662993
Total Bases33.8 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGGTTGGGATCTCGTATGCCGT136302.0558286437413367No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGGTTGGGATCTCGTATGCCG13190.19894629355061066No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGGTTGGGATCTCGTATGCC7310.11025757436353023No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)