FastQCFastQC Report
Wed 8 May 2024
EGAF00003443134

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003443134
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences267326
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTGTGGTGATCTCGTATGCCGT97423.6442396175456184No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTGTGGTGATCTCGTATGCCG8700.3254453364057368No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGTGGTGATCTCGTATGCC4160.15561524131584656No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)