FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003443294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003443294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences897893
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGGCAGAAATCTCGTATGCCGTC300853.350621956068262No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGGCAGAAATCTCGTATGCCGT46410.5168767325282634No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGGCAGAAATCTCGTATGCCG13680.15235668392559024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)