FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003443378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003443378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences787347
Sequences flagged as poor quality0
Sequence length51
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCCACTCCTATCTCGTATGCCGTC46920.5959253035827913No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCACTCCTATCTCGTATGCCGT9930.12611974135927362RNA PCR Primer, Index 27 (95% over 21bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)