FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003443430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003443430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences706044
Sequences flagged as poor quality0
Sequence length51
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTAAGATTTTGCGTAGCTGGGTTTGGTTTAATCCACCTCAACTGCCTGC9470.13412761810878643No Hit
ACACAATGGGGCTCACTCACCCACCACATTAACAACATAAAACCCTCATTC9250.13101166499538272No Hit
TCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTCC8380.11868948677419539No Hit
ATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCATAATATAGC8200.11614007059050145No Hit
GTTGTATATAGCCTAGAATTTTTCGTTCGGTAAGCATTAGGAATGCCATTG7930.11231594631496053No Hit
ATCCTGAGGCATGGGGGTCAGGGGTTGAGGTCTTGGTGAGTGTTTTAGTGG7920.1121743120825331No Hit
ATGGTAGATGTGGCGGGTTTTAGGGGCTCTTTGGTGAAGAGTTTTATGGCG7770.11004979859612148No Hit
AACTACTACCGCATTCCTACTACTCAACTTAAACTCCAGCACCACGACCCT7460.10565913739087082No Hit
GTGTAGGAAGAGGCAGATAAAGAATATTGAGGCGCCATTGGCGTGAAGGTA7130.10098520772076527No Hit
GTGTAAGGAGAAGATGGTTAGGTCTACGGAGGCTCCAGGGTGGGAGTAGTT7090.1004186707910555No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)