FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003443849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003443849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400486
Sequences flagged as poor quality0
Sequence length51
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTGTGGTGATCTCGTATGCCGTC114542.8600250695405083No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTGTGGTGATCTCGTATGCCGT16930.4227363753040056No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGTGGTGATCTCGTATGCCG6820.17029309389092254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)