FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003443881

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003443881
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences935596
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCGTC318083.3997580152116935No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCGT35170.37591011504965816No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCG14700.15711909841427282No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)