FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003443998

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003443998
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences701303
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCCGTC311754.445296826050937No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCCGT50000.712958592790848No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCCG13480.1922136366164126No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)