FastQCFastQC Report
Sat 3 Sep 2022
EGAF00003444034

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003444034
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1359953
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCGTC245271.8035182098204865No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCGT55720.40972004179556204No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCG24120.17735907049728925No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)