FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003444067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003444067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences580564
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCCGTC110511.9034938439172941TruSeq Adapter, Index 9 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCCGT18650.32123934656644226No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCCG7820.1346966053699506No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)