FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003444087

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003444087
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468215
Sequences flagged as poor quality0
Sequence length51
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGTC90601.9350084896895658No Hit
TCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGT16070.34321839325950687No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCG5250.11212797539591854No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)