FastQCFastQC Report
Wed 8 May 2024
EGAF00003444296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003444296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences944571
Total Bases48.1 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGAGGGGTTATCTCGTATGCCGT568656.020193294098591No Hit
TCTTATACACATCTCCGAGCCCACGAGACGAGGGGTTATCTCGTATGCCG58640.6208109289825752No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGAGGGGTTATCTCGTATGCC25940.2746220241781719No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)