FastQCFastQC Report
Wed 8 May 2024
EGAF00003444318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003444318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1653765
Total Bases84.3 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGT415722.513779164512491No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCG47340.2862559069759004No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCC18610.1125311032704163No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)