FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003444465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003444465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2173083
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCCACTCCTATCTCGTATGCCGTC492812.2677918882987904No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCACTCCTATCTCGTATGCCGT46100.21214099967649647RNA PCR Primer, Index 27 (95% over 21bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)