FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003444471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003444471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences196813
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGTC3211216.315995386483618No Hit
TCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGT32511.6518217800653414No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCG25131.2768465497705943No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCC5680.28859882223227123No Hit
ATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGTCTTC2710.13769415638194632RNA PCR Primer, Index 46 (95% over 22bp)
CTGTCTCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTAT2320.1178783921793784No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)