FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003444605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003444605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences164170
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTC2256013.74185295730036No Hit
TCTTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGT22691.3821039166717426No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCG10780.656636413473838No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCC2100.12791618444295547No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)