FastQCFastQC Report
Sat 3 Sep 2022
EGAF00003444611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003444611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1039206
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCACTGTATCTCGTATGCCGTC233292.2448869617765874No Hit
TCTTATACACATCTCCGAGCCCACGAGACACCACTGTATCTCGTATGCCGT24000.23094554881322857No Hit
CTCTTATACACATCTCCGAGCCCACGAGACACCACTGTATCTCGTATGCCG10630.10228963266185914No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)