FastQCFastQC Report
Thu 16 Jun 2022
EGAF00003444639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003444639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429365909
Sequences flagged as poor quality0
Sequence length151
%GC23

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGTTGATATGGTGTTTATTTTGAAGGAGTTGTTAGTGATAATTGGAGT36207270.8432730508187597No Hit
GTAGTTGATATTGAATTGTTTGTGTTTATTTTGTGTGTATGTGTAGGAAA21110460.4916659557151753No Hit
GTAGTTGATATGTATGTTGGATTTTGTAGGATATTTTTGTTTTTTTGTTT13522330.3149372066239195No Hit
GTAGTTGATATGTATGTTGGATTTTGTGGGATATTTTTGTTTTTTTGTTT5510090.12833086848541578No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)