FastQCFastQC Report
Wed 8 May 2024
EGAF00003444707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003444707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences288693
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGT148785.1535714409424545No Hit
TCTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCG31991.1080975292092292No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCC11040.3824131516870863No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)