FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003444725

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003444725
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences613165
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCCGTC259424.2308350933272445TruSeq Adapter, Index 9 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCCGT38780.6324561904218277No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCCG19230.3136186833886474No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)