FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003444729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003444729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403700
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCCGTC239835.9407976219965315No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCCGT31230.7735942531582859No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCCG16620.41169185038394845No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)