FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003444737

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003444737
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508393
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCCGTC238484.6908592368502315No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCCGT37060.7289636167295773No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCCG14680.2887529922717268No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)