FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003444771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003444771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences277823
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCCGTC214707.727941891060136TruSeq Adapter, Index 9 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCCGT28911.0405905918516467No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCCG13100.4715232360171764No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCC4050.14577626762363088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)