FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003444779

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003444779
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences195197
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGGTTGGGATCTCGTATGCCGTC2989015.312735339170173No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGGTTGGGATCTCGTATGCCGT29081.4897769945234813No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGGTTGGGATCTCGTATGCCG13800.7069780785565352No Hit
TTTATACACATCTCCGAGCCCACGAGACAGGTTGGGATCTCGTATGCCGTC2590.1326864654682193No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACAGGTTGGGATCTCGTATGCC2530.1296126477353648No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)