FastQCFastQC Report
Wed 8 May 2024
EGAF00003446567

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003446567
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16307821
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT721970.44271395914880346No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT410210.2515418828793865No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT364540.22353691520160787No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA210040.12879709680404267No Hit
GTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTGTG199840.12254242918167915No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATG190360.1167292675091295No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA170480.1045387976726014No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)