FastQCFastQC Report
Sat 11 May 2024
EGAF00003446577

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003446577
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26707180
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT569850.21336958825304655No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT315060.11796827669563016No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT306710.11484177663085358No Hit
TCCCAGTATCATGCTATGTGCAAAGAAGGTTTCCAATAATCTTAGTAATG291530.10915791184243338No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)