FastQCFastQC Report
Tue 13 Sep 2022
EGAF00003447685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003447685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21853257
Sequences flagged as poor quality0
Sequence length65
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGAC6184902.8301959749066237No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGA1302930.5962177628716855No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTG1130400.5172684328015728No Hit
CCACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCT750240.3433080936173496No Hit
GTAGGAATATGCAGGCGCAGACACGAGGCCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTA354610.16226871811373472No Hit
CTGGGAAGCTGTAGGAATATGCAGGCGCAGACACGAGGCCCAGCTTCATCTTCAACGTTGTGGAA270190.12363832082329879No Hit
CAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGG257050.11762548712990471No Hit
CTGGGAAGCTGTAGGAATATGCAGGCGCAGACACGAGGCCCAGCTTTATTTCCAACGTTGTGGAA247430.11322339731784604No Hit
GTAGGAATATGCAGGCGCAGACACGAGGCCCAGCTTTATTTCCAACGTTGTGGAAAGGGACTTGT244680.11196500366055274No Hit
CGATCATCAATGGCTGACGGCAGTTGCAGCCAAGCAACGCCAGAAAGCCGGCTTCACGCTCAGGA219530.10045642166748874No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)