FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003447871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003447871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences140
Sequences flagged as poor quality0
Sequence length35-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGCTGGGGGGCTCCCCGTACCCCGGCATCCCTGTGGAGGAGCTCTTCA32.142857142857143No Hit
AAGGAGTTTTAAACTTCATCCTATACAAAATCACTAAAAGGTTTTTAGAA21.4285714285714286No Hit
CCACCTTGGTGCAGGGACCAGACAACTGTATCCAGTGTGCCCACTACATT21.4285714285714286No Hit
CTTTCACCATGATGTTACTATTGTGACGATCTCCAATTCCCAAAATGAAG21.4285714285714286No Hit
GAGTCATAAGGCAGCTGCATCGGGTCCACATAAATATATTCATGTCCATC21.4285714285714286No Hit
GGTTGAGAAGTTTCAGCATGCAAAATCTATAAATTATAAAGAAAGAAAGA21.4285714285714286No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN21.4285714285714286No Hit
CCCTCATCTGAAGGTTCCCTCTCCCAGAGGCAGAGGTCGACATCCACACC21.4285714285714286No Hit
ATGGACATCAGGACATTCTCACCAAGTAGCTCAGGGCACTGGCCAGCTGT21.4285714285714286No Hit
ACCTCATGGATTAGAAGATTTGCTGAACCCTATTGGTGTTACTGGATCAA21.4285714285714286No Hit
AAACATCCCCTTAAATTGGATTAAAAAGAAATATACCTTTGTTGTTACCT21.4285714285714286No Hit
GAACTCCACGTTGCTACCCAGGGCCACTGTTTTGTTGGCGGGCAACCCTG21.4285714285714286No Hit
GGACCCCGGCACTGCTGAATTGCATCCCCTCTTCTCCCTTTCTCCTCGGC10.7142857142857143No Hit
GGGTATGAGGCTACAGTTGCAGGCACTTAGAGATAGGCTTGCCTTTCTTC10.7142857142857143No Hit
AAGAGGACACTCAACTTAATATTCTGTTCACCCATTTGATCCAAGGG10.7142857142857143No Hit
CCGGAAAGTCCACGCTCACCATGTGTGACTTGATTAGCAGGTCAAAAGTG10.7142857142857143No Hit
CAGCTGGTATTGGGATTGGGGCTGAACCAAGGATGATGTGGGTGGGCTGT10.7142857142857143No Hit
CCATGCTGCTCGGGATCCATATGTGGTAATCATTATTTAATGGAAACTCT10.7142857142857143No Hit
ACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTCGTTCGATTGCCAGCTC10.7142857142857143No Hit
CGAGGTCATAGTTCCTGTTGGTGAAGCTAACGTTGAGGGGCATCGTCGCG10.7142857142857143No Hit
AAAGGGACCCACAGACTGGAACAACCTCACATTTCGGCTTTAGAACAAAT10.7142857142857143No Hit
AGACAGCAAAGTTCTGTAGCTCCCTCCTGGCAAGGGGTTTGAGTTTTCTG10.7142857142857143No Hit
CCAGAATGACCACAAACCTTCAGTTCCTTTGCTGCATTGCACTTACTCTA10.7142857142857143No Hit
AGGATATTCACATGTCGTGTTTTCCTGTACAAGGAAATGTGACAGTAAAC10.7142857142857143No Hit
ATTCATCTACAAAGTGGTTCTGGATTAGCTGGATTGTCAGTGCGCTTTTC10.7142857142857143No Hit
CCCTCATCTCTAATGGTGTCCTCCTCCTCTTCCCTAGATAACTTTGTGGT10.7142857142857143No Hit
GTAAGTCAAAGGGGTATTCGATGATCCCTGTGGTGGGGACTCGAACTCTA10.7142857142857143No Hit
TCAGAGAGAAGAAACCAATTGGTTGGGACACTGATATTTCCTGGCTTACT10.7142857142857143No Hit
GAAAGTATAACCTTCTTCTTTCCGCTTTGCAGTTGGTGGAACCATTAACT10.7142857142857143No Hit
GGGAGAGTTGGGAACATACTTCTATTTATATTCATAAGTATAGGAAGAAA10.7142857142857143No Hit
CACCCCTGCGCTAACAGGTTTCTGTCCAGGCAGTGCACCCAGCAACCCCC10.7142857142857143No Hit
GGGACCATTATGGACATCAGGACATTCTCACCAAGTAGCTCAGGGCACTG10.7142857142857143No Hit
GCAGGAGGATAAAGACCTGGTCCATGGAAATGTGTGTACTAAAAACCTCC10.7142857142857143No Hit
CCACCTTTCAGCAAATTTAATCATCCCAACATTCTGAAGCAGCTTGGAGT10.7142857142857143No Hit
ACAAAAGGCGGATGTGTCAATGGTATTTACAGAAATGTTCCCCAGGGGTA10.7142857142857143No Hit
CATATCAGCTTTAGGAAAGATGATAAAAGAAATGGGCCCAGAGGGACCTA10.7142857142857143No Hit
AAACATCCCCTTAAATTGGATTAAACAGAAATATACCTTTGTTGTTACCT10.7142857142857143No Hit
CATAGGGACTCTGGATCCCAGAAGGTGAGAAAGTTAAAATTCCCGTCGCT10.7142857142857143No Hit
CCCCTGCCAGAAGGCGAATGGAATTCCATGGAGCAAAAGGTGATGTCAGA10.7142857142857143No Hit
AACAAGGGGTGCCACAGCCCCAGATCTAGCCCCAAGTGAGACCTGAGGGC10.7142857142857143No Hit
CCTGGGAGGACTCACTGATTAGTTCTATTGTGTTCATTTGTCTGTGTCTT10.7142857142857143No Hit
GCAAACCTACTGGCTAAATTTTCAGAGTATAAGTTAGAAGAGGACACTCA10.7142857142857143No Hit
ACAATCTTTGATGACATTGCATACATTCGAAAGACCCTAGCCTTAGATAA10.7142857142857143No Hit
GAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGACCTGGCAGCCAGGG10.7142857142857143No Hit
GAGGAAGTAGCCTCCCACGATGAGCACCAGGCCGATTGGGGCCAGCACGA10.7142857142857143No Hit
CGAGGTCATAGTTCCTGTTGATGAAGCTAACGTTGAGGGGCATCGTCGCG10.7142857142857143No Hit
CTCCTTTACCAGAATATGAGAGTAAAGGATGAATAAAGATTGTGCCATGA10.7142857142857143No Hit
ACAGAAAACAAGTGGTTATAGATGGTGAAACCTGTTTGTTGGACATACTG10.7142857142857143No Hit
CACCAGTTACCTGTCCTGGTCATTTATAGAAACCGAGGTATGAAATTCGC10.7142857142857143No Hit
CAACGTGAAATAAACCTAGATAGTTGGGGCTTTTCTTCCTATACTTATGA10.7142857142857143No Hit
AAATTTTCAGAGTATAAGTTAGAAGAGGACACTCAACTTAATATTCTGTTCACCCATTTGATCCAAGGG10.7142857142857143No Hit
CCCAAGAGAAAAAACTAGTTCAAAAATCTGAATGAACTCAAGGAAAATTT10.7142857142857143No Hit
AGCAGCCAAAACCTTTAAAACATCCTCAATGGTCTTCAAAAATAATTTAC10.7142857142857143No Hit
CCAGCCACGTGAGGCCCTGCAATAGGAAACGCTTTTTCCTTTGGGACAAT10.7142857142857143No Hit
AAGGGAAAAATTTGGAAAATAGCAATACAAAAGCATCTAGCCACTTATAAAAAAAAAC10.7142857142857143No Hit
CTAGATCTACCTCTCGACCCACTATGGGAGTTCCCCCGGGACAGGTGCGC10.7142857142857143No Hit
TAACACATTTATGGGAGGGAAGAAAATAAGACTAGGGAAAAGAATGCAGG10.7142857142857143No Hit
CGGGAGCACAGCTGCTGCTGGTACTGGAGATGGCTGTGGGCACAGGGAAA10.7142857142857143No Hit
TCTGGGGAATGTATATTATGTTTTCCACTACATATTTTCATTTAATTTTC10.7142857142857143No Hit
GAAATAGTAGCAGTGGGGTTGGGCCCACTCAATTGACTTAAGAAAATAAT10.7142857142857143No Hit
GTTTTGCCTCACAGTTTGCTGTTTGTCTCCAAGTTCTTTGAACACCACCC10.7142857142857143No Hit
GTGCTCCATGCAGATACTGATCTCGCCATCGCTGTAGAACGTACCATAGA10.7142857142857143No Hit
CAAAAATGGTTTTTCATGCACTTCTTTAAAAAGTTCAACAGCAGCTGACA10.7142857142857143No Hit
GTCCTTACCACACCATGGAAATTCAAAGTTGCCAAACAGCTGGCCAGTGC10.7142857142857143No Hit
AAAACATGGTAAGAAACCATTCTTTTCCCCCATTCTTTCTGTAAACAGTT10.7142857142857143No Hit
GAACTGAAGATAATGACTCACCTGGGGCCACATTTGAACATTGTAAACTT10.7142857142857143No Hit
GGGAGATTCCTGATGGGCAGATTACAGTGGGACAAAGAATTGGATCTGGA10.7142857142857143No Hit
ACACCGTGCCGAACGCACCGGAGCCCAGCACTTTGATCTTTTTGAATTCA10.7142857142857143No Hit
ATGGGGCCGTAGGAACCGGCTCCGGGGCCCCGATAACGGGCCGCCCCCAC10.7142857142857143No Hit
GCTTGGGAATGTGCTTTGCTTTGGGTGTGTCCAAAGCCTCATTAAGTCTT10.7142857142857143No Hit
CAGCCTGTTTCTGGGAAACTCCCATTTGTGATCATAAGGAAGTTGTGTTG10.7142857142857143No Hit
CCCCACTCCTCCTTTCTTCCCTCTCTCCACCAGAGCGATCGCCTCACCGG10.7142857142857143No Hit
GAAAGTATAACCTTCTTCCTTCCGCTTTGCAGTTGGTGGAACCATTAACT10.7142857142857143No Hit
GAAATCATCGCAGAAGGATAAAGTTCGTCAGTTTATGATCTTCACACAATCTAGTGAAAAAACAGCAGT10.7142857142857143No Hit
CACCAAGTTTCCTTCCAGGAGCCTCAAAGACCTCTCCTCAGCCCAGAAGT10.7142857142857143No Hit
AAGAAATAGTCATATCATATTGTTTAAACTGAAAATTCATTTTGCATGCA10.7142857142857143No Hit
GCAGAAATCAGATTTCTGTTTTATTGAATGCTACCAGGAAAATGGGAGAA10.7142857142857143No Hit
GGGAATCCTGCTGCCACACATTGGAGCATGCCATTCACGAGCCTGTCGTA10.7142857142857143No Hit
CTTTTTAATGATCCTCTATTCTGTATTTAATTTACAGGCTACGCTATGCT10.7142857142857143No Hit
CTCTGCTCTGCAGCAAATTCAACCACCAGAACATTGTTCGCTGCATTGGG10.7142857142857143No Hit
GGGAAGGCCTCCTCCACCTCCTCCTCCATTGGGGACTCTCACACTCTTGA10.7142857142857143No Hit
ACCAGACACTGTACAAGCTCTACGAGAGGTGTGAGGTGGTGATGGGGAAC10.7142857142857143No Hit
GAGCCTAGGAACCCCTTGTTACCCACCCCCCAGCTCCCCAGCCCTCAGGTCTCACTTGGAGCTAGATCTGGGG10.7142857142857143No Hit
GACATGGTAGTTGCAGGGTGCTAGTGAGCAGTCATGCCCCCAAATCAGCC10.7142857142857143No Hit
AAGTTCCAGCAGATGCCACATAAGGGGTTCGCCATTTGATACCCCTGGGGAACATTTCTGTAAATACCATTGAC10.7142857142857143No Hit
AAAAAACTGAGGCTCTTTAGCTTCTTAGGACAGCACTTCCTGATTTTGTT10.7142857142857143No Hit
GGTTTATGAACAAGCGATTTGGGGAATTCAAGGTAGTCCAGGGTATGTGG10.7142857142857143No Hit
CCACGGCCGACCAGCTGGAGATGGTGACCGAGCTGCTGGGAGGAGACATG10.7142857142857143No Hit
GCCTCCCGCTTTGTGTGCCCCGCTCCAGCAGCCTCCCGCGACGATGCCCC10.7142857142857143No Hit
GCACTGGAAAAAAACTGGTCTGAAAAACTGCTTGGGATGTGATCTGAGAT10.7142857142857143No Hit
TCCACTCTGGCTCTGCCAGGCCCGCTCCCTGAAGTCAGGGAGGAGGAATT10.7142857142857143No Hit
TACCACTCAGAGAAGGAGCTGTGGTAGTGGCACCAGAATGGATTCCAGAG10.7142857142857143No Hit
CACTCCTTTTTCCCCCCAGTATTAATAATTTTACATGTAATAGATGTATA10.7142857142857143No Hit
AAAGCAGAATTCTGATTTCTGCAATGTAGGCCACCTTAGAGCAAAATACA10.7142857142857143No Hit
CCCAGGATAGGACATTGATGCCAATTCTTACCTAAGACTTAATGAGGCTT10.7142857142857143No Hit
GGTCCAGGCAGTGCAGCATGTAGTGATTGGGCCCAGTAGCCTGATTGTGC10.7142857142857143No Hit
CAAGCAGAGAATGGGTACTCACGTTTCCTTTAACCACATAATTAGAATCATTCTTGATGTCTCTGGC10.7142857142857143No Hit
ACTGCTGTTTTTTCACTAGATTGTATGAAGATCATAAACTGACGAACTTTATCCTTCTGCGATGATTTC10.7142857142857143No Hit
CAAAGTGTTGAGGGAAAACACATCCCCCAAAGCCAACAAAGAAATCTTAG10.7142857142857143No Hit
GGTGACAAGGCTCCACATCTCCATGGATACTCCACAGTGAGCTCGATCCT10.7142857142857143No Hit
GAAGGCCCTTTCTTCTGGTTGAGAAGTTTCAGCATGCAAAATCTATAAAT10.7142857142857143No Hit
GAAGTTCAAATGCCCTTCCAGTGGGACCCCAAACCCCACACTGCGCTGGT10.7142857142857143No Hit
GGGAAAAGTACCAGACACAAATGTTATGTTGGAGAATCTTACAAGATGTG10.7142857142857143No Hit
TCTCCGAGCCCACGAGACGTGAATATATCTCGTATGCCGTCTTCTGCTTG10.7142857142857143TruSeq Adapter, Index 2 (96% over 28bp)
GATGAGCAGCAGCGAAAGTGCCTTGAGGCCTTTCTTACCCAGAAGCAGAA10.7142857142857143No Hit
AGAATATGAAGAAGAACACAAACCAAGTAGCTGTGGGTTGAACCTGGACG10.7142857142857143No Hit
GAAGAGACCACTCAATCCATCCATGTACTTCCCTCTTGAAACCTGATGTC10.7142857142857143No Hit
CCCCATAAGCATGACGACCTATGATGATAGGTTTTACCCATCCACTCACA10.7142857142857143No Hit
CAGTGCCCCCTCCCCGCCTGCTGTGGCCCGGGCGGTACCGGAAGATGATG10.7142857142857143No Hit
TTTAAAATGGCGCTTAAGTTCCAGCAGATGCCACATAAGGGGTTTGCCAT10.7142857142857143No Hit
GCTTTTGCCTTCCATTCTCCCTGTAAGGGTCCACGTGAACAGCAAGTTTG10.7142857142857143No Hit
CGATCTGCCATGTGTGCATTCCCTATCAAATATGTCAACGACTTCTTCAA10.7142857142857143No Hit
GCTTGGGAATGCGCTTTGCTTTGGGTGTGTCCAAAGCCTCATTAAGTTTT10.7142857142857143No Hit
GCTCTCTGCGTTCGAGGATAAACCCCTTTCTAGCACTGGCTGTTTGTTAG10.7142857142857143No Hit
GCTAAATAATTAGATGCATCTTGGGCAATGCAGAAAGCACATACAAAGAA10.7142857142857143No Hit
TAAGAGGCAGAGATGGGAGAATCAGTATTTCAAATGTGTGTCCTTTCTCA10.7142857142857143No Hit
ACCAACTCTCAGATCGCTGGAGCCCTTAGACAAACTGGAAAGAAGGCATC10.7142857142857143No Hit
AATTTTAGGGACTGAGGTGTAGGATCTTCGATGCAAGGCATGTGTCATGT10.7142857142857143No Hit
CAAACACAGATTAGAGTCACACAACTTTTGTGTTTTATCCTTCTTCTCCT10.7142857142857143No Hit
GGAACATTCTCCAACACTTCCACATGCAATTCTTCTCCAGTAAGCCAGGA10.7142857142857143No Hit
ACAACGATGTGGGCAAGACTTCTGCCTATTTTAACTTTGCATTTAAAGGT10.7142857142857143No Hit
CAAAAAGGGATTCAATTGCCATCCATTTAACTGGAATCCGACCCTAAAGA10.7142857142857143No Hit
AGAAACATGTCATGTTGTCAGCAGAACGATGCAGCCAGTAGTTTATGTTC10.7142857142857143No Hit
GTAAGAATTGCTAAAGTTTGTCGACATTTAATGTTTACTGTCACATTTCT10.7142857142857143No Hit
TAATACACTCTTGTGCTGACTTACCAGATGGGACACTCTAAGATTTTCTG10.7142857142857143No Hit
GCACTTGCAGATTCCATCTCTTGCCTGTGTTGTTCATCTTTTTTTTCTTT10.7142857142857143No Hit
TCTGTTCATCCAGACCCCCAGGGAAAGGCTTGGTTTTAACTCTTCCCTTC10.7142857142857143No Hit

[FAIL]Adapter Content

Adapter graph