FastQCFastQC Report
Wed 13 Sep 2023
EGAF00003448272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003448272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40309040
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGATGTCCGCTGCAATCTGCTCCGGGGCTGCAGCAACCTCATCAGCT701730.17408749997519168No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN452430.11224033120113999No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)