FastQCFastQC Report
Wed 6 Sep 2023
EGAF00003448276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003448276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42289128
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1234110.29182677874086216No Hit
GTCCAGGTGAGCCAGGCCATCACTAAAGGCACCGAGCACTTTCTTGCCAT489500.11575079060509358No Hit
GTCACAGTGCAGCTCACTCAGTGTGGCAAAGGTGCCCTTGAGGTTGTCCA426370.10082260386168283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)