FastQCFastQC Report
Tue 5 Sep 2023
EGAF00003448279

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003448279
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36298573
Sequences flagged as poor quality0
Sequence length35-151
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGA2113230.5821799110394781No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1013160.2791184105226396No Hit
ATACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTC902880.24873705090279996No Hit
ATACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTGACTC870780.23989372805371714No Hit
ATCACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTG673020.18541224747319957No Hit
ATCTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACG672530.1852772559406123No Hit
ATCACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTG632220.17417213618838406No Hit
ATCAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGAC601260.16564287527225932No Hit
ATCAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC586310.1615242560637301No Hit
ATGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCCTG584010.16089062233934098No Hit
ATCAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTGAC578320.15932306760378706No Hit
ATCTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCC566990.1562017327788616No Hit
ATGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTGACTCCTG563950.15536423429097337No Hit
ATCTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTGACTCC532840.14679364943630152No Hit
ATGACACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACC470370.129583606496046No Hit
ATGACACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATC448890.123666018496099No Hit
ATGTTTGCCGCCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAA392800.10821362040871413No Hit
ATAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAG378400.10424652230819102No Hit
ATTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCCT377600.10402612796927306No Hit
ATGGAACGTCTGAGGTTATCAATAAGCTCCTAGTCCAGACGCCATGGGTC377070.10388011671973992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)