FastQCFastQC Report
Sat 23 Apr 2022
EGAF00003470728

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003470728
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24714530
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTGAAA1542450.09.197644140-144
TTGAAAA1536000.08.809705140-144
TGAAAAA1466750.08.756356140-144
TCTGCTT2147100.08.278792140-144
CTGCTTG2012600.08.268247140-144
TTCTGCT2303950.08.202693140-144
CGTCTTC2781000.08.058527140-144
GTCTTCT2710700.07.9955297140-144
CCGTCTT2980650.07.7912283140-144
GCCGTCT3121950.07.729184140-144
TCTTCTG2713850.07.6355143140-144
TGCCGTC3313150.07.6325817140-144
ATGCCGT3487500.07.485124140-144
TATGCCG3677200.07.4059978140-144
CTTCTGC2689850.07.389928140-144
GTATGCC3911000.07.199646140-144
CGTATGC4092900.07.0960484140-144
GAAAAAA1746000.07.024344140-144
TCGTATG4220950.06.9155755140-144
CGGAGTC345000.06.82430034
Produced by FastQC (version 0.11.5)