FastQCFastQC Report
Sat 23 Apr 2022
EGAF00003470730

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003470730
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27276302
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTGAAA1216350.09.49227140-144
TTGAAAA1236800.08.70893140-144
TGAAAAA1176150.08.625433140-144
CGTCTTC2257000.08.564079140-144
CTGCTTG1655950.08.383735140-144
CCGTCTT2424650.08.316387140-144
TCTGCTT1775100.08.314216140-144
GTCTTCT2245300.08.253403140-144
GCCGTCT2549150.08.222037140-144
TTCTGCT1915950.08.184016140-144
TGCCGTC2719250.08.064109140-144
ATGCCGT2856300.07.9211874140-144
TATGCCG3020700.07.886227140-144
TCTTCTG2300750.07.66519140-144
GTATGCC3241050.07.63575140-144
CGTATGC3386800.07.5125103140-144
TCGTATG3507950.07.374976140-144
CTCGTAT3705250.07.2461534140-144
CTTCTGC2345300.07.211362140-144
TCTCGTA3923100.07.0078483140-144
Produced by FastQC (version 0.11.5)