FastQCFastQC Report
Sat 23 Apr 2022
EGAF00003470734

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003470734
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24808891
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTGAAA2669400.09.898278140-144
TGAAAAA2392000.09.859028140-144
TTGAAAA2530900.09.843672140-144
ATACGCT6608.176521E-49.8269711
CTGCTTG3440850.09.234196140-144
TCTGCTT3679150.09.095589140-144
TTCTGCT3955750.08.862933140-144
CGTTAGT13403.0793672E-78.5966998
GTCTTCT4799850.08.411032140-144
CGTCTTC5010250.08.361037140-144
TGCGTAT14701.412991E-78.326464
TCTTCTG4642050.08.266697140-144
CTTCTGC4446250.08.262502140-144
GAAAAAA2699750.08.221531140-144
CCGTCTT5368750.08.085159140-144
TGCTTGA3753350.08.035672140-144
TGTCGAG18851.880835E-98.02092559
AAAAACG140400.07.9179196140-144
GCCGTCT5642850.07.8787127140-144
TGCCGTC5979350.07.6084776140-144
Produced by FastQC (version 0.11.5)