FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003470884

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003470884
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1128163
Sequences flagged as poor quality0
Sequence length25-376
%GC44

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAGGTCAATTTCACTGGTTAAAAGTAAGAGACAGCTGAACCCTCGTGG136381.2088678674978706No Hit
AAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGT95590.8473066392001865No Hit
GGCAGGTCAATTTCACTGGTCATTAGAGAAATGCAAATAAAAACCACAAT11930.10574713051216889No Hit
AAATCTTACCCCGCCTGTTTACCAAAACATCACCTCTAGCATCACCAGTA11890.10539257181807948No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)