FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003470890

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003470890
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1206783
Sequences flagged as poor quality0
Sequence length8-621
%GC44

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAGGTCAATTTCACTGGTTAAAAGTAAGAGACAGCTGAACCCTCGTGG100120.8296437719125974No Hit
AATTAGGCTGTGGGTGGTTGTGTTGATTCAAATTATGTGTTTTTTGGAAA89340.7403153673858515No Hit
AAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGT88010.7292943304637205No Hit
AATTAGGCTGTGGGTGGTTGTGTTGATTCAAATTATGTGTTTTTGGAAAG16600.137555799178477No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)